In-Depth Introduction to Bioinformatics Freelancing - BioCode Learn. SaaS. Research
Bioinformatics Freelancing Training In-Depth Introduction to Bioinformatics Freelancing
Bioinformatics Freelancing Training
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Bioinformatics Freelancing Training
In-Depth Introduction to Bioinformatics Freelancing
Video - 31:44 mins
In-depth guide on FIVERR
Video - 13:51 mins
In-depth guide on Upwork
Video - 14:44 mins
What kind of services can you sell as a Bioinformatician?
Video - 9:24 mins
What exactly do you need to learn to provide your services?
Video - 12:40 mins
How to connect with clients and accept their projects?
Video - 14:19 mins
Case Study 1: Mutagenesis of Proteins Using PyMol
Video - 9:53 mins
Case Study 2: Scripting for biological analysis
Video - 8:11 mins
Case Study 3: Functional Bioinformatics Analysis
Video - 1:08:16 mins
Bioinformatics Databases
Introduction to National Center of Biotechnology Information (NCBI)
Video - 18:02 mins
Sequence Analysis
Video - 17:59 mins
Sequence Retrieval from NCBI
Video - 16:17 mins
PubMed Central & ENTREZ
Video - 11:07 mins
GenBank: Nucleotide Database on NCBI
Video - 6:50 mins
FASTA vs GenBank
Video - 18:26 mins
Gene Database: A Comprehensive Gene Database
Video - 30:21 mins
NCBI Genomes & NCBI Assembly: Retrieval of Genomes
Video - 36:14 mins
RefSeq Database: Retrieval of Single Reference Sequences
Video - 11:16 mins
BLAST Database Searching
Video - 25:37 mins
Introduction to Molecular Modeling Database
Video - 8:07 mins
Database of Short Genetic Variations (dbSNP)
Video - 12:16 mins
HomoloGene: Discovery of Gene and Protein Families
Video - 6:11 mins
Taxonomy
Video - 9:57 mins
Introduction to UCSC Genome Browser & SARS-CoV-2 Viral Genome
Video - 13:40 mins
Retrieve an Entire Genome & Retrieval of SARS-CoV-2 Viral Genome
Video - 9:41 mins
Retrieval of Genomic Data & Annotation of SARS-CoV2 Viral Genome
Video - 5:30 mins
Table Browser & SARS-CoV-2 Viral Genome
Video - 12:16 mins
Visualization of Genomic Data on the Genome Browser & SARS-CoV-2 Genome
Video - 10:51 mins
UniProt BLAST - Database Searching
Video - 12:33 mins
UniProt Peptide Search - Find Regions Within UniProt Database
Video - 3:15 mins
Introduction to ENSEMBL
Video - 7:50 mins
Retrieval of a Gene-Protein-Chromosomal Region
Video - 18:02 mins
Genome Assembly Retrieval and Analysis
Video - 10:24 mins
Gene Analysis & Annotation
Video - 34:40 mins
Variation Analysis
Video - 24:37 mins
ENSEMBL BLAST/BLAT
Video - 15:08 mins
Regulation - Understand the Influence of Regulatory Elements on Genes
Video - 4:19 mins
Comparative Genomics Analysis
Video - 5:35 mins
Introduction to Phytozome
Video - 9:39 mins
Interpret Plant Genome Records
Video - 9:07 mins
Download an Entire Plant Genome & Proteome
Video - 26:41 mins
Keyword or BLAST Search in a Plant Genome
Video - 15:58 mins
Visualize a Plant Genome Using JBrowse
Video - 17:38 mins
UniProt Align - Pairwise & Multiple Sequence Alignment and Annotation
Video - 3:48 mins
UniRef And Retrieve Protein Clusters
Video - 11:36 mins
UniParc And Find the Non-Redundant Entries
Video - 4:59 mins
Genome Reference Consortium (GRC)
Video - 7:48 mins
BioProject
Video - 6:40 mins
BioSystems
Video - 4:16 mins
BioSample
Video - 2:56 mins
Sequence Read Archive (SRA)
Video - 7:15 mins
Introduction to Gene Expression Omnibus Database
Video - 9:16 mins
Gene Expression Omnibus - Platforms
Video - 5:42 mins
Gene Expression Omnibus - Samples
Video - 4:16 mins
Gene Expression Omnibus - Series
Video - 4:01 mins
Gene Expression Omnibus - Datasets
Video - 4:45 mins
Bioinformatics File Formats
FASTA (Sequence Format)
Video - 6:13 mins
GenBank (Sequence Annotation Format)
Video - 7:08 mins
FASTQ Format
Video - 18:02 mins
Gene File Format/Gene Transfer Format
Video - 11:07 mins
BED (Gene Structure Format)
Video - 4:27 mins
SAM
Video - 9:07 mins
BAM
Video - 9:07 mins
Clustal Omega Alignment Format
Video - 5:32 mins
MEGA (Alignment Format)
Video - 5:32 mins
PHYLIP - Multiple Sequence Alignment Format
Video - 4:35 mins
Stockholm Alignment Format
Video - 3:10 mins
Protein Databases & Analysis
Introduction to UniProt
Video - 9:56 mins
UniProtKB & Protein Analysis
Video - 39:30 mins
UniProteome & Retreieval of an Entire Proteome
Video - 13:05 mins
UniProt BLAST - Database Searching
Video - 12:33 mins
ID Mapping & Making Analysis Easier
Video - 7:17 mins
Introduction to Protein Data Bank (PDB)
Video - 6:45 mins
Accurately Searching for a Protein Structure on PDB & Protein Analysis
Video - 13:56 mins
Biological Annotation and Protein Features View & Analysis
Video - 8:18 mins
Browsing PDB According to Annotation
Video - 6:52 mins
Digging Out Categorized & Specific Protein Structures from PDB Archives
Video - 6:23 mins
Alignment Between Two PDB Sequences & Structures
Video - 6:08 mins
3D Structure Visualization on PDB
Video - 10:49 mins
Mapping Genomic Position to Protein Sequence and 3D Structure
Video - 4:35 mins
Genomic Discovery of Protein Structure Through Gene
Video - 4:07 mins
PDB - Protein Symmetry
Video - 2:34 mins
Introduction to InterPro
Video - 4:10 mins
InterPro - Protein Family Classification and Analysis
Video - 14:35 mins
InterPro - Protein & Protein Domain Analysis
Video - 9:29 mins
HMMER - Hidden Markov Model Based Protein Profiles Database
Video - 13:16 mins
SignalP: Prediction of Signal Peptides
Video - 7:57 mins
TargetP: Prediction of Protein Localization
Video - 9:22 mins
Pfam - Understand the Relation of a Protein to its Family and Clan
Video - 15:56 mins
PROSITE - A Database of Protein Domain, Families and Functional Sites
Video - 13:46 mins
ScanProsite - Scanning Protein for Important Protein Sites Against PROSITE Database
Video - 7:36 mins
Marcoil - Predict Coiled Coil Domains in Proteins
Video - 4:06 mins
SMART
Video - 6:45 mins
PDB - Ligands
Video - 5:23 mins
Sequence Alignment & Analysis
EMBOSS NEEDLE: Global Alignment of Sequences
Video - 20:02 mins
Clustal Omega: Most Reliable Multiple Sequence Alignment Tool
Video - 19:18 mins
EMBOSS Water
Video - 9:10 mins
Jalview
Video - 13:42 mins
T-Coffee: Iterative Multiple Sequence Alignment Tool
Video - 8:38 mins
MUSCLE: Accurate Multiple Sequence Alignment Tool
Video - 21:08 mins
MEGA - Multiple Sequence Alignment
Video - 4:23 mins
MAFFT - Fastest Multiple Sequence Alignment Tool
Video - 8:22 mins
Aln2Plot
Video - 2:31 mins
Phylogenetic Analysis
MEGA
Video - 21:20 mins
iTOL: Creating Publishable Phylogenetic Figures
Video - 13:43 mins
FigTree
Video - 21:27 mins
Secondary Structure Prediction
Quick2D
Video - 4:33 mins
Ali2D
Video - 4:09 mins
Jpred: Prediction Secondary Structure of the Proteins
Video - 4:55 mins
HHrepID
Video - 5:15 mins
DeepCoil
Video - 3:23 mins
3D Structure Prediction
MODELLER: Most Commonly Used Homology Modelling
Video - 36:13 mins
SwissModel: Homology Modeling Through Web-server
Video - 12:53 mins
HHPred
Video - 14:09 mins
M4T
Video - 9:27 mins
IntFold
Video - 8:41 mins
ROBETTA: ab initio Protein Structure Prediciton
Video - 14:40 mins
Homology Modeling Using MOE
Video - 12:34 mins
3D Structure Visualization
UCSF CHIMERA
Video - 25:23 mins
PyMol
Video - 40:49 mins
3D Structure Evaluation
WhatCheck
Video - 8:40 mins
ProCheck
Video - 12:41 mins
ERRAT
Video - 6:44 mins
Verify3D
Video - 8:35 mins
RAMPAGE
Video - 3:30 mins
SAVES
Video - 5:32 mins
PROSA
Video - 10:05 mins
Molecular Docking
MOE: Protein Ligand Docking
Video - 9:23 mins
MOE: Protein Protein Docking
Video - 11:39 mins
SwissDock Protein Ligand Docking
Video - 19:16 mins
Autodock Vina Protein Ligand Docking
Video - 15:49 mins
MOE: Docking Library of Compounds
Video - 19:48 mins
MOE: Structure Based Drug Designing
Video - 16:19 mins
ClusPro Protein Protein Docking
Video - 21:44 mins
Patchdock Protein Protein Docking
Video - 17:40 mins
PEPFOLD 3 Peptide Structure Prediction
Video - 13:15 mins
Zdock Protein Protein/Ligand docking
Video - 19:35 mins
MDockPEP Protein Peptide Docking
Video - 10:06 mins
Discovery Studio+
Video - 12:03 mins
Docking Complex Evaluation
PDBsum Docking Complex Evaluation
Video - 18:50 mins
Pdbepisa Docking Complex Evaluation
Video - 23:27 mins
SwissADME
Video - 15:31 mins
Gene Prediction
GeneMark: Gene Prediction from Eukaryotic Genomes
Video - 16:51 mins
Prodigal: Gene Prediction from Microbial Genomes
Video - 25:47 mins
GenScan - Prediction of Genes from Green Monkey and Finding a Novel Gene
Video - 10:41 mins
AUGUSTUS - Prediction of Novel Genes in Star Fish or Any Genome
Video - 17:28 mins
PPI Database
STRING: Comprehensive Protein-Protein Interaction Database
Video - 13:17 mins
Genomics Tools
Gene Structure Display Server 2.0
Video - 8:36 mins
Molecular Dynamics Simulation
Getting Started With Molecular Dynamics Simulation - Pre-processing of Protein Structure and Removal of Unnecessary Structural Features
Video - 12:34 mins
pdb2gmx - Construction of Topology File for Simulation
Video - 9:01 mins
Defining a Solvant Box for Simulation
Video - 4:14 mins
Solvation - Adding Water Molecules in Solvant Box
Video - 5:31 mins
Generating Input Run File Replacement of Water Molecules With Ions
Video - 6:55 mins
Genion - Replacement of Water Molecules With Ions
Video - 4:19 mins
Energy Minimization - Relaxing and Fixing the Structure for Simulation
Video - 11:25 mins
GRACE - Visualization and Analysis of Minimized Structure
Video - 4:12 mins
Equibiliration of Protein Structure NVT ENSEMBLE Phase 1
Video - 8:38 mins
Equibiliration of Protein Structure NPT ENSEMBLE Phase 2
Video - 8:10 mins
mdrun - Executing Simulation Analysis
Video - 3:47 mins
Python
Introduction to Python and it's Installation
Video - 8:25 mins
Why Python in Bioinformatics
Video - 9:16 mins
Comments
Video - 5:43 mins
Basic Input and output
Video - 15:38 mins
Mathematical Operations
Video - 7:20 mins
Strings
Video - 21:51 mins
Dictionaries
Video - 10:57 mins
Lists
Video - 28:48 mins
Lists (pt 2) and Tuples
Video - 10:38 mins
Sets
Video - 7:36 mins
If-Else
Video - 9:19 mins
For Loop and Calculation of Molecular Weight of Proteins
Video - 10:56 mins
While Loop and Biological Data Analysis
Video - 9:37 mins
Reading Files
Video - 13:45 mins
CSV (A special kind of file in Bioinformatics)
Video - 8:42 mins
Writing Files
Video - 7:18 mins
Consolidate (merge) multiple DNA and Protein Sequences into one FASTA file
Video - 9:25 mins
OS
Video - 31:47 mins
Function
Video - 26:41 mins
With
Video - 8:50 mins
Error Handling
Video - 15:31 mins
BioPython
Introduction to BioPython & Installation
Video - 10:19 mins
Bio.Seq Seq Object Behaves Like a String
Video - 9:54 mins
Bio.Seq Create a Seq Object
Video - 7:34 mins
Bio.Seq Central Dogma in Play Through Python
Video - 8:41 mins
Bio.Seq Unknown & Mutable Sequences
Video - 6:54 mins
Bio.Alphabet Understanding the Alphabets of Biology
Video - 7:38 mins
Bio.Alphabet IUPAC and Types of Sequence Representations
Video - 7:38 mins
Bio.Alphabet Concatenation of Multiple Seq Records Using Generic Alphabets
Video - 9:47 mins
SeqRecord Creating Seq Records
Video - 12:28 mins
SeqRecords & FASTA
Video - 4:36 mins
SeqRecords & GenBank
Video - 3:29 mins
SeqRecord Formatting Records
Video - 3:06 mins
SeqRecord Comparison & Reading Multiple FASTA Files from Directory
Video - 5:47 mins
SeqIO Reading a Sequence File
Video - 10:32 mins
SeqIO - Write Sequences and SeqRecords Into Files
Video - 11:43 mins
SeqIO Extracting Annotations and Pattern-wise Sequence Data Extraction
Video - 10:35 mins
AlignIO - Writing Alignments and Multiple Sequence Alignment Records
Video - 5:29 mins
AlignIO - Conversion of Alignment Formats
Video - 4:02 mins
AlignIO - Manipulating Alignments
Video - 2:57 mins
AlignIO - ClustalW Python Wrapper - Align Multiple Sequences
Video - 7:47 mins
AlignIO - Pairwise2 - Align Two Sequences
Video - 7:31 mins
AlignIO - Information Mapping of Alignments
Video - 2:33 mins
AlignIO - Format Alignments
Video - 3:36 mins
AlignIO - Slicing Alignments
Video - 6:06 mins
Bio.Blast - Querying NCBI BLAST Through Python
Video - 11:15 mins
Draft LessonBio.Blast - Parsing BLAST Results
Video - 14:52 mins
Bio.Entrez - Accessing ENTREZ Using Python
Video - 9:32 mins
Bio Entrez Use Esummary To Get Summary Of Your Accessions
Video - 8:59 mins
Bio.Entrez - Use EFetch to Download Complete Records
Video - 13:57 mins
Bio.Entrez - Use EGQuery to Do Global Quries for Search Counts
Video - 7:24 mins
Bio.Entrez - Use Elink To Search For Database Links Of Records
Video - 3:42 mins
Bio.Entrez - Use ESearch to Search the Entrez Databases
Video - 8:20 mins
Bio.Entrez - Use Espell To Get Correct Spellings For Your Search Terms
Video - 5:21 mins
Bio.Entrez - Download GenBank and Entrez Records
Video - 14:17 mins
Bio.Entrez - Taxonomy Database Searching
Video - 7:05 mins
Bio.Entrez - Download PubMed Articles
Video - 8:28 mins
Bio.PDB - Reading a PDB (3D Structure) File
Video - 11:59 mins
Bio.Phylo - Calculating Distance Matrix Between Sequences For Phylogenetic Analysis
Video - 4:18 mins
Bio.Phylo - Converting Phylogenetic Tree Data Formats
Video - 3:29 mins
Bio.Phylo - Printing Out Phylogenetic Tree In Ascii
Video - 2:17 mins
Bio.Phylo - Reading Phylogenetic Trees
Video - 6:29 mins
Bio.Phylo - Visualization And Manipulation Of Phylogenetic Trees
Video - 9:36 mins
Bio.motifs - Creating a WebLogo of Motifs
Video - 10:47 mins
Bio.Phylo - Writing Out Phylogenetic Data
Video - 4:04 mins
Bio.motifs - MEME Analysis
Video - 9:49 mins
R
Introduction to R in Bioinformatics & R Installation
Video - 9:48 mins
The R User Interface
Video - 6:23 mins
Comments
Video - 4:17 mins
Variable Declaration and Objects
Video - 5:24 mins
Built-in Functions & ARGS
Video - 4:32 mins
Sample & Replacement
Video - 9:09 mins
Write Your Own Functions And Arguments
Video - 5:39 mins
Scripts
Video - 7:36 mins
Packages
Video - 4:00 mins
Install Packages
Video - 5:25 mins
Library & Initialize Packages
Video - 2:28 mins
Getting Help with Help Packages
Video - 3:43 mins
Atomic Vectors
Video - 2:43 mins
Doubles
Video - 3:31 mins
Integers
Video - 3:23 mins
Characters
Video - 4:43 mins
Logicals
Video - 2:27 mins
Attributes and Names
Video - 4:46 mins
Dim & Dimensions
Video - 5:46 mins
Matrix & Matrices
Video - 4:43 mins
Arrays
Video - 3:42 mins
Class
Video - 3:13 mins
Factors
Video - 6:41 mins
Lists
Video - 6:42 mins
Coercion
Video - 4:27 mins
Data Frames
Video - 6:30 mins
Loading Biological Data
Video - 7:56 mins
Saving Biological Data
Video - 5:27 mins
R Notation & Selecting Values from Biological Dataset
Video - 4:09 mins
Negative Integers for subsetting Biological Dataset (DataFrame)
Video - 5:28 mins
Positive Integers for subsetting Biological Dataset (DataFrame)
Video - 5:26 mins
Zero Notation for subsetting Biological Datasets (DataFrames)
Video - 1:09 mins
Blank Spaces For Biological Data Subsetting
Video - 3:21 mins
Dollar Signs for Biological Dataset Subsetting
Video - 2:58 mins
Modifying Values in Existing DataFrames/Datasets
Video - 7:06 mins
NA Values in Biological Dataset
Video - 5:25 mins
Figuring out NA Values in Biological Dataset
Video - 2:06 mins
Logical Subsetting in Biological Datasets
Video - 9:46 mins
If Else Statement
Video - 4:15 mins
For Loops & Biological Data Binding
Video - 16:30 mins
While Loops & Reading Multiple Biological Datasets
Video - 16:16 mins
Introduction to ggplot2 for Biological Datasets
Video - 10:46 mins
ggplot2: Key components
Video - 8:26 mins
ggplot2: Human Mitochondrial Proteome & Aesthetics (Size, Shape, Color)
Video - 26:06 mins
ggplot2: Facetting of Human Genome
Video - 22:25 mins
ggplot2: Smooth Out the Biological Data
Video - 8:43 mins
ggplot2: Boxplots for Human Mitochondrial Proteome
Video - 7:56 mins
ggplot2 :Histograms for Human Mitochondrial Pattern Finding
Video - 6:02 mins
ggplot2: Frequency Plots for Human Mitochondrial Information Frequency Mining
Video - 6:13 mins
ggplot2: Bar Charts Human Mitochondrial Knowledge Mining
Video - 10:43 mins
ggplot2 - Scaling and Limiting Data Visualization
Video - 3:53 mins
ggplot2 - Changing Labels and Finalizing Visualization
Video - 8:42 mins
ggtree - Phylogenetic Tree Visualization
Video - 5:41 mins
ggplot2 - Saving the Visualizations in High Resolution
Video - 4:45 mins
Linux
Introduction to Linux for Bioinformatics
Video - 22:32 mins
PWD - Print Working Directory
Video - 1:26 mins
CD - Changing Directories
Video - 5:03 mins
MKDIR - Making Directories
Video - 8:13 mins
MV - Moving Files, Directories and Data
Video - 5:11 mins
RM - Deleting Files and Directories
Video - 1:24 mins
Which & Whereis - Find Programs You Installed
Video - 3:43 mins
LS - Listing Files and Directories on Linux
Video - 6:46 mins
Find - Finding User Created Files
Video - 3:39 mins
Piping and Redirection of Data
Video - 6:35 mins
Cat - Visualization and Inspection of Text Data
Video - 3:56 mins
Head - Reading Specified Number of Lines from Top
Video - 3:50 mins
Tail- Reading Specified Number of Lines from Bottom
Video - 2:23 mins
Touch - Modifying File Statistics and Creating Files
Video - 7:04 mins
Stat - Statistics of File & Directories
Video - 2:43 mins
Wget - Retrieval of Genome Assemblies
Video - 6:48 mins
Curl - Retrieval of Bioinformatics Files
Video - 2:25 mins
Vim - Create and Edit Text Files
Video - 5:59 mins
Diff - Find Sequence Differences in Files
Video - 2:35 mins
GZIP - Compress and Archive Files Efficiently
Video - 6:05 mins
Tar - Create Archives of Genome Data
Video - 4:19 mins
GUNZIP - Extract Compressed Content
Video - 2:14 mins
Grep - Finding Uncharacterized Proteins in Human Genome
Video - 8:55 mins
Cut - Subsetting Required Textual Data from Text Files
Video - 5:49 mins
Sort - Sorting Data
Video - 4:23 mins
Uniq - Finding Unique Data Items
Video - 10:33 mins
WC - Statistics of the Data Within File
Video - 2:46 mins
CP - Copying Files and Files Contents
Video - 3:43 mins
Column - Proper Visualization of Delimited Datasets
Video - 4:38 mins
R
Introduction to BioConductor
Video - 10:28 mins
Installing Packages from BioConductor
Video - 4:12 mins
Reading and Writing the FASTA File
Video - 6:58 mins
Getting the Detail of a Sequence Composition
Video - 7:46 mins
Pairwise Sequence Alignment
Video - 8:08 mins
Multiple Sequence Alignment
Video - 9:47 mins
Handling BLAST Results
Video - 3:54 mins
Pattern Finding in a Sequence
Video - 5:51 mins
Performing ID Conversions
Video - 5:45 mins
The GO Annotation of Genes
Video - 4:33 mins
The GO Enrichment of Genes
Video - 9:28 mins
The KEGG Enrichment of Genes
Video - 7:16 mins
Introduction to dplyr
Video - 15:38 mins
Filter Rows with filter()
Video - 20:13 mins
Select Columns with select()
Video - 28:30 mins
Add New Variables with mutate()
Video - 21:19 mins
Grouped Summaries with summerize()
Video - 18:30 mins
Grouped Mutates (and Filters)
Video - 19:58 mins
Introduction to tidyr
Video - 11:35 mins
Data Spreading Function
Video - 13:51 mins
Data Gathering Function
Video - 19:30 mins
Data Separating & Pull
Video - 17:24 mins
Missing Values
Video - 29:58 mins
Introduction to Microarray Analysis & R
Introduction to ArrayExpress - Getting Started With MicroArray Analysis
Video - 00:9:56 mins
Introduction to BioConductor - Installating MicroArray Packages
Video - 5:06 mins
Getting Started with R Studio Project for MicroArray Analysis
Video - 4:51 mins
Downloading MicroArray Raw Data from ArrayExpress
Video - 4:19 mins
Creating Raw Intensities MicroArray Data Structure and Log2 Transformation
Video - 14:41 mins
Quality Control & Normalization
Principle Component Analysis of Raw Expression Dataset
Video - 00:15:44 mins
Box Plot Visualization of Raw Intensity Data to Interpret the Median Intensities of the Samples
Video - 3:11 mins
ArrayQualityMetrics - Automated Quality Control for Microarray Datasets
Video - 00:5:38 mins
Robust Multi-Array Summarization and Background Correction of the Raw MicroArray Data
Video - 00:3:47 mins
Relative Log Expression Analysis and Visualization
Video - 00:8:57 mins
Normalization of Raw Intesnities Values
Video - 4:36 mins
Heatmap Visualization of the Normalized Gene Expression Values
Video - 00:11:52 mins
Intensity-based Filtration of Low-Intensity Transcripts
Video - 00:6:19 mins
Filtering out the Genes that are Above Threshold
Video - 00:6:02 mins
Annotating the Probe IDs with Gene Symbols and Names
Video - 4:19 mins
Removal of the Probe IDs that Match to Multiple Genes
Video - 4:04 mins
Excluding Probe IDs with Multiple Mappings from the ExpressionSet
Video - 4:39 mins
Differential Expression Analysis
LIMMA - Data Preparation for Linear Modelling
Video - 11:49 mins
Factors Preparation
Video - 10:26 mins
Analysis of Gene Expression Levels of a Single Gene Among Different Conditions
Video - 12:00 mins
Applying t-test to Find if Genes are Differentially Expression
Video - 6:51 mins
LIMMA - Applying Linear Model on a Single Gene Expression Data
Video - 00:05:34 mins
LIMMA - Applying Linear Model for Differential Gene Expression Analysis
Video - 11:38 mins
Extraction of Differentially Expressed Genes from the Fitted Linear Model
Video - 3:35 mins
Setting a Threshold for Differentially Expressed Genes
Video - 4:17 mins
Volcano Plot - Visualization of the Genes that are Differentially Expressed
Video - 4:36 mins
Downstream Functional Enrichment Analysis Using enrichR - Gene Ontology & KEGG Pathways Analysis
Video - 8:44 mins
Target Identification
Target Selection
Video - 3:20 mins
Removing Duplicates
Video - 3:46 mins
Screening Non-homologous Proteins
Video - 6:42 mins
Immunoinformatics Approach for Epitope Prediction
Screening Antigenocity Of Protein
Video - 4:21 mins
Linear B-cell Epitope Prediction
Video - 2:22 mins
Assessment Of Linear B-Cell Epitope
Video - 5:06 mins
CTL Epitope Prediction
Video - 4:54 mins
Computational Construction of the Vaccine
CTL Epitope Assessment
Video - 4:14 mins
HTL Epitopes Prediction and Assesment
Video - 6:43 mins
HTL Epitopes Prediction and Assesment
Video - 6:43 mins
Molecular Dynamics and Immune Simulation
Molecular Dynamic Simulation
Video - 2:14 mins
Immune Simulation
Video - 2:19 mins
In Silico Cloning
Video - 2:45 mins
Supplementary 1
Codon Optimization
Video - 2:35 mins
Supplementary 2
Disulfide Engineering
Video - 3:03 mins
Supplementary 3
Docking of Protein and TLR4
Video - 2:18 mins
Introduction to NGS, RNA-Seq Pipeline & GALAXY
Introduction to Next Generation Sequencing & RNA-Seq
Video - 12:09 mins
RNA-Seq Data Analysis Workflow
Video - 1:20 mins
What is Galaxy
Video - 4:11 mins
How to Get Started With Galaxy Account
Video - 1:01 mins
Practical RNA-Seq Differential Gene Expression Analysis
RNA-Seq Dataset Retrieval
Video - 3:27 mins
Quality Control with FastQC
Video - 10:02 mins
Pro-processing of the Reads
Video - 4:39 mins
Alignment of the Reads Against Reference Genome
Video - 5:16 mins
Post Alignment Processing
Video - 5:37 mins
Transcript Assembly and Quantification with StringTie
Video - 4:57 mins
Differential Gene Expression Analysis with DESEQ2
Video - 9:20 mins
Evaluation
Exercise
Quiz
Announcements Reviews Live Classes Gradebook Certificate Course Info
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