Command-line Based Practical RNA-Seq Data Analysis With Linux & R (Subscription)

Categories: Linux, NGS, RNA-Seq
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About Course

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What Will You Learn?

  • Introduction to RNA-Seq, NGS
  • In-depth Knowledge of R & Linux
  • Command-line tools for RNA-Seq
  • Quality Control and Trimming
  • Mapping & Evaluation of Alignment
  • Discovering DEGs with DESeq2, edgeR and Ballgown
  • Functional Analysis with Gene Ontology & KEGG Pathways

Course Content

In-Depth Introduction to RNA-Seq

  • In-depth Introduction to RNA-Seq Data Analysis, Linux Computing and R
  • Introduction to Linux for Bioinformatics
  • Introduction to ArrayExpress – Getting Started With MicroArray Analysis

Genomic Databases for Raw Data

File Formats

Introduction to Linux for RNA-Seq

RNA-Seq Data Analysis Pipeline (Theoretical & Practical)


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