Single-Cell ATAC-Seq (scATAC-Seq) Services
Expert, end-to-end Single-Cell ATAC-Seq (scATAC-Seq) Services from BioCode — send us your data and research question and we deliver the analysis, a clear report and reproducible code you can publish with confidence.
- Confidential & NDA-friendly
- Report + reproducible code
- Real research datasets
Single-cell ATAC-Seq (scATAC-Seq) analysis
Single-cell ATAC-Seq (scATAC-Seq) extends chromatin accessibility profiling to the resolution of individual cells, uncovering the regulatory heterogeneity that bulk assays average away. By measuring open chromatin in thousands of single cells, it reveals distinct regulatory states, cell types and the cis-regulatory elements that define them.
We analyse 10x Genomics and other scATAC-Seq datasets end to end, delivering annotated cell populations, regulatory insight and integration with single-cell transcriptomics.
Our Services
- Quality control and cell / barcode filtering
- Dimensionality reduction and clustering (LSI, UMAP)
- Peak calling and gene-activity scoring
- Cell-type annotation and label transfer
- Transcription-factor motif and footprinting analysis (chromVAR)
- Differential accessibility between cell types or conditions
- Integration with scRNA-Seq and multiome data
- Trajectory and gene-regulatory-network inference
The result is a reconstruction of the gene-regulatory programmes — and the enhancers and transcription factors — that drive cell identity in development, immunity and disease.
Tell us about your
analysis
Share your research question and dataset and we'll get back to you with a scope, timeline and quote — usually within one to two working days.
- Attach data: PDF, DOCX, PDB, SDF, CSV, XLS, XLSX
- No-obligation quote
- Replies within 24–48 hours
