Functional Bioinformatics Internship Course

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About Course

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What Will You Learn?

  • Bioinformatics Databases
  • Understanding Bioinformatics
  • Sequence and Biological Data Analysis
  • Predictive Bioinformatics
  • Bioinformatics Scripting in Linux, Python and R
  • Functional Bioinformatics Analysis & High-Throughput Genomics Data Analysis

Course Content

Segment 1: Bioinformatics Databases

  • Introduction to NCBI
    18:02
  • Sequence Retrieval
    16:17
  • Sequence Analysis
    17:59
  • PubMed Central & ENTREZ
    11:07
  • FASTA vs GenBank
    18:26
  • Gene
    30:21
  • GenBank
    06:50
  • Assembly & NCBI Genome
    36:14
  • Genome Reference Consortium (GRC)
    07:48
  • BioProject
    06:40
  • BioSystems
    04:16
  • BioSample
    02:56
  • Sequence Read Archive (SRA)
    07:15
  • Introduction to UCSC Genome Browser & SARS-CoV-2 Viral Genome
    13:40
  • Retrieve an Entire Genome & Retrieval of SARS-CoV-2 Viral Genome
    09:41
  • Table Browser & SARS-CoV-2 Viral Genome
    12:16
  • Retrieval of Genomic Data & Annotation of SARS-CoV-2 Viral Genome
    05:30
  • Visualization of Genomic Data on the Genome Browser & SARS-CoV-2 Genome
    10:51
  • Introduction to ENSEMBL
    07:50
  • Retrieval of a Gene-Protein-Chromosomal Region
    18:02
  • Gene Analysis & Annotation
    34:40
  • Genome Assembly Retrieval and Analysis
    10:24
  • Comparative Genomics Analysis
    05:35
  • Database of Short Genetic Variations (dbSNP)
    12:16
  • Database of Genomic Structural Variation (dbVar)
    06:25
  • Variation
    24:37
  • NCBI BLAST Database Searching
    25:37
  • BLAST/BLAT
    15:08
  • HomoloGene (Gene and Protein Families)
    06:11
  • RefSeq Database
    11:16
  • Taxonomy
    09:57
  • Introduction to UniProt
    09:56
  • UniProtKB & Protein Analysis
    39:30
  • Introduction to Protein Data Bank (PDB)
    06:45
  • Introduction to Molecular Modeling Database
    08:07
  • UniProteome & Retreieval of an Entire Proteome
    13:05
  • UniRef & Retrieve Protein Clusters
    11:36
  • UniParc & Find the Non-Redundant Entries
    04:59
  • Introduction to InterPro
    04:10
  • Protein & Protein Domain Analysis
    09:29
  • InterPro – Protein Family Classification and Analysis
    14:35
  • Peptide Search: Searching for a Particular Peptide on UniProt
    03:15
  • Uniprot Align Pairwise And Multiple Sequence Alignment And Annotation
    03:48
  • Accurately Searching for a Protein Structure on PDB & Protein Analysis
    13:56
  • Browsing PDB According to Annotation
    06:52
  • Digging Out Categorized & Specific Protein Structures from PDB Archives
    06:23
  • 3D Structure Visualization on PDB
    10:49
  • Biological Annotation and Protein Features View & Analysis
    08:18
  • Genomic Discovery of Protein Structure Through Gene
    04:07
  • Mapping Genomic Position to Protein Sequence and 3D Structure
    04:35
  • Alignment Between Two PDB Sequences & Structures
    06:08
  • Ligands
    05:23
  • Protein Symmetry: Understanding the Protein Validation
    02:34
  • Introduction to Phytozome
    09:39
  • Interpret Plant Genome Records
    09:07
  • Keyword or BLAST Search in a Plant Genome
    15:58
  • Visualize a Plant Genome using JBrowse
    17:38
  • Download an Entire Plant Genome & Proteome
    26:41
  • Introduction to Gene Expression Omnibus Database
    09:16
  • Gene Expression Omnibus (GEO) Platforms
    05:42
  • Gene Expression Omnibus (GEO) Samples
    04:16
  • Gene Expression Omnibus (GEO) Datasets
    04:45
  • Gene Expression Omnibus (GEO) Series
    04:01
  • Regulation
    04:19
  • UniProt BLAST & Protein Database Searching
    12:33
  • ID Mapping & Making Analysis Easier
    07:17
  • PROSITE
    13:46
  • Pfam: Understanding Protein Families and their Members
    15:56
  • STRING: Protein-Protein Network Database and Analyzing PPI Between Proteins
    13:17

Segment 2: Understanding Bioinformatics

Segment 3: Sequence and Biological Data Analysis

Segment 4: Predictive Bioinformatics

Segment 5: Bioinformatics Scripting in Linux, Python and R

Functional Bioinformatics Analysis & High-Throughput Genomics Data Analysis

Evaluation

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