Command-line Series Introductory Linux for bioinformatics

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About This Course

Intermediate Linux Scripting For Bioinformatics Allows You To
Level-up Your Scripting Skills In Linux

Linux/Unix operating systems are always the first choice of Bioinformaticists to handle and analyze huge biological datasets in a much easier and efficient manner. Linux allows you to develop and utilize command line tools for easier and efficient data analysis of biological nature utilizing the command-line interface of Linux/Unix operating systems.
About 90% of the Bioinformatics programs, scripts, or packages are built for Linux computers rather than other operating systems. This is due to the reason that most of the bioinformatics analysis is done on servers earlier, so
most of the programmers code the programs, scripts, or packages that can be run on Linux OS rather than on the Windows operating systems.
Moreover, Linux makes the automated biological analysis easy by providing the ability to create various pipelines so that you don’t have to write the code again and again.
In this course you’ll learn intermediate biological programming on Linux terminal to efficiently retrieve, manipulate and analyze bioinformatics genomic datasets. Along with, learn how to get started with Linux, how to
process and pre-process biological data to manipulate and analyze large genomic files and create pipelines to process the datasets.
Joining and learning from the Intermediate Linux Scripting for Bioinformatics can enhance your biological career by learning through various useful & informative pre-recorded lectures on Linux(BASH) scripting.

Learning Objectives

Getting Familiar With Linux
Piping and Control Data Flow
Pre-processing Biological Datasets
Processing and Analysis of Biological Datasets

Target Audience

  • The target audience for the Intermediate Linux Scripting for Bioinformatics are biologists, beginner or intermediate Bioinformaticians or data analysts with no or little experience in applications of computational bioinformatics
  • and analysis.
  • However, a superficial understanding of molecular biology and logic development for coding is expected from you before you join the course.
  • Bioinformatics is quite easy to get started in, even if you lack a proper understanding of the underlying concepts of Bioinformatics databases, servers, tools and the algorithms working behind them

Curriculum

25 Lessons8h 50m

Linux

Introduction to Linux for Bioinformatics00:22:32
PWD – Print Working Directory00:01:26
Exercise
CD – Changing Directories00:05:03
Exercise
MKDIR – Making Directories00:08:13
Exercise
MV – Moving Files, Directories and Data00:05:11
Exercise
Which & Whereis – Find Programs You Installed00:03:43
Exercise
Find – Finding User Created Files00:03:39
Exercise
LS – Listing Files and Directories on Linux00:06:46
Exercise
Piping and Redirection of Data00:06:35
Exercise
Cat – Visualization and Inspection of Text Data00:03:56
Exercise
Tail- Reading Specified Number of Lines from Bottom00:02:23
Exercise
Touch – Modifying File Statistics and Creating Files00:07:04
Exercise
Stat – Statistics of File & Directories00:02:43
Exercise
Wget – Retrieval of Genome Assemblies00:06:48
Exercise
Curl – Retrieval of Bioinformatics Files00:02:25
Exercise
Vim – Create and Edit Text Files00:05:59
Exercise
GZIP – Compress and Archive Files Efficiently00:06:05
Exercise
GUNZIP – Extract Compressed Content00:02:14
Exercise
Tar – Create Archives of Genome Data00:04:19
Exercise
Grep – Finding Uncharacterized Proteins in Human Genome00:08:55
Exercise
Sort – Sorting Data00:04:23
Exercise
Uniq – Finding Unique Data Items00:10:33
Exercise
WC – Statistics of the Data Within File00:02:46
Exercise
CP – Copying Files and Files Contents00:03:43
Exercise
Column – Proper Visualizations of Delimited Datasets00:04:38
Exercise

Evaluation

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$46.89$66.99

30% off
Level
Intermediate
Duration 8.8 hours
Lectures
25 lectures
Language
English

Material Includes

  • Step-by-step pre-recorded lectures
  • Learn any time, any where!
  • Transcription
  • Notes
  • Coding scripts
  • BioPresentations
  • Exercises
  • Automated Evaluations (MCQs)
  • 100% Authentic Certificate

Enrolment validity: 180 days

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