In-depth Introduction to RNA-Seq Data Analysis - BioCode Learn. SaaS. Research
End-to-End RNA-Seq Data Analysis With Python-Based Pipeline In-depth Introduction to RNA-Seq Data Analysis
End-to-End RNA-Seq Data Analysis With Python-Based Pipeline
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In-Depth Introduction to RNA-Seq
In-depth Introduction to RNA-Seq Data Analysis
Video - 44:08 mins
Introduction to ArrayExpress
Video - 9:56 mins
Genomic Databases for Raw Data
BioProject
Video - 6:40 mins
BioSystems
Video - 4:16 mins
BioSample
Video - 2:56 mins
Introduction to Gene Expression Omnibus Database
Video - 9:16 mins
Gene Expression Omnibus - Platforms
Video - 5:42 mins
Gene Expression Omnibus - Samples
Video - 4:16 mins
Gene Expression Omnibus - Series
Video - 4:01 mins
Gene Expression Omnibus - Datasets
Video - 4:45 mins
Gene Expression Omnibus - Profiles - How to Search for Gene Expression Profiles
Video - 5:55 mins
NCBI Genomes & NCBI Assembly
Video - 36:14 mins
Genome Reference Consortium
Video - 7:48 mins
Introducton to Phytozome
Video - 9:39 mins
Download an Entire Plant Genome & Proteome
Video - 26:41 mins
Introduction to UCSC Genome Browser
Video - 13:40 mins
How to retrieve an entire genome & Retrieval of SARS-CoV-2 Viral Genome
Video - 9:41 mins
Introduction to ENSEMBL
Video - 7:50 mins
Genome Assembly Retrieval and Analysis
Video - 10:24 mins
File Formats
BED
Video - 4:27 mins
GTF/GFF
Video - 11:07 mins
SAM
Video - 9:07 mins
FASTQ
Video - 18:02 mins
RNA-Seq Data Analysis Pipeline (Theoretical & Practical)
Introduction to Anaconda for Bioinformatics and NGS
Video - 22:46 mins
Introduction to Jupyter-Notebook for NGS Analysis
Video - 17:14 mins
How to Retreive Raw Reads for RNA-Seq Data Analysis
Video - 3:26 mins
Retrieval of Data Required for this Course
Video - 8:45 mins
Setting Up Python Environment for RNA-Seq Analysis
Video - 00:44:25 mins
In-depth Theory: Quality Control
Video - 19:37 mins
Practical: Preprocess Raw Reads Using FASTQC, FASTP
Video - 01:08:30 mins
In-depth Theory: Mapping & Transcriptome Assembly
Video - 48:22 mins
Practical: Mapping Preprocessed Reads Against a Reference Genome Using HISAT2, TOPHAT2, BOWTIE2, STAR
Video - 31:51 mins
Practical: Transcriptome Assembly Using StringTie
Video - 00:34:09 mins
Mapping Visualization & Evaluation
Video - 36:37 mins
In-depth Theory: Gene Quantification, Expression Estimation & Differential Gene Expression
Video - 18:28 mins
In-depth Theory: DeSeq2, Ballgown, edgeR
Video - 32:22 mins
Differential Expression Analysis With PyDESeq2
Video - 01:31:46 mins
Theory: Functinal Enrichment Analysis of the DEGs
Video - 18:39 mins
Practical: Functional Enrichment Analysis Using GSEApy and Enrichr (KEGG, PANTHER, Reactome, Gene Ontology)
Video - 00:22:43 mins
Practical: Shortlisting Terms for Module Score Analysis and Protein-Protein Interaction Using STRING
Video - 00:29:21 mins
Legacy Tutorials
Practial: Gene Ontology Analysis
Video - 28:02 mins
Practical: Pathways Analysis Using KEGG, PANTHER, Reactome
Video - 12:41 mins
Practical: Protein-Protein Interaction Using STRING (WEB)
Video - 00:13:16 mins
Announcements Reviews Live Classes Gradebook Certificate Course Info
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