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COVID-19 Genomic Research Training

5.0/5
(2 ratings)
5 Lessons
Intermediate
What you'll learn
Introduction to Genomes & Genomes
Introduction to Genome Browsers
Genome Retrieval
Genome Visualization
Genome Analysis

Bioinformatics MasterClass

148 Lessons
Beginner
What you'll learn
Introduction to Bioinformatics
Bioinformatics Databases
Sequence Analysis and Alignment
Scoring Matricies
Multiple Sequence Alignment
Databases Searching
DNA & Protein Analysis
Protein & Gene Families
Gene Prediction
Regulatory Elements
Evolution and Phylogenetic Trees
Concepts of Phylogenetic Trees Contrusction
Phylogenetic Models
Construction of Phylogenetic Trees
Introduction to Structural Bioinformatics
Structural Features of Proteins
Determination of Structures of Proteins
Protein Structure Databases & Formats
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Command-line Based Practical RNA-Seq Data Analysis With Linux & R

57 Lessons
7 hours
All Levels
What you'll learn
Introduction to RNA-Seq, NGS
In-depth Knowledge of R & Linux
Command-line tools for RNA-Seq
Quality Control and Trimming
Mapping & Evaluation of Alignment
Discovering DEGs with DESeq2, edgeR and Ballgown
Functional Analysis with Gene Ontology & KEGG Pathways

Molecular Dynamics Simulation Course

11 Lessons
1.3 hour
Beginner
What you'll learn
Protein Structure Preparation
Energy Minimization
Minimized Structure Visualization
NVT Ensemble
NPT Ensemble
Simulation Execution

Command-line Series Advanced Linux Scripting For Bioinformatics

49 Lessons
16.4 hours
Expert
What you'll learn
Getting Familiar With Linux
Piping and Control Data Flow
Processing and Analysis of
Biological Datasets
Molecular Dynamics
Simulations: GROMACS
RNA-Seq Analysis and NGS Analysis

Advanced Bioinformatics Scripting in Python, BioPython, R & BioConductor

151 Lessons
23.5 hours
Expert
What you'll learn
Introduction
Iterable Objects
Control Flow
File Handling
Functions & Modules
Error Handling
Sequence Analysis
Sequence Data Parsing
Sequence Data Extraction
Alignment Parsing and Analysis
BLAST Database Searching
Parsing BLAST results
Biological Data Retrieval
Parsing a PDB Structure file
Phylogenetic Analysis
Protein Sequence Analysis
Variables & Functions
Packages
Vectors & Data Types
Biological Data Analysis
Data Visualization: ggplot2
Getting Familiar With Linux
Piping and Control Data Flow
Pre-processing Biological Datasets
Processing and Analysis of Biological Datasets
BioConductor
Sequence Retrieval
Bioinformatics File Parsing and Writing
Sequence Alignment
Database Searching
Gene Enrichment Analysis
Data Transformation with dplyr
Tidy Data with tidyr
MicroArray Analysis: BioConductor

Fundamental Bioinformatician Course in R

77 Lessons
17.5 hours
Beginner
What you'll learn
NCBI
Sequence Format
UCSC
UniProt
PDB
ENSEMBL
InterPro
Phytozome
Pairwise Sequence Alignment & Analysis
Multiple Sequence Alignment & Analysis
Alignment Format
Phylogenetic Tree Building & Visualization
Secondary Structure Prediction
Protein Analysis
Genomics Tools
Introduction to R
Variables & Functions
Vectors & Data Types
Packages
Biological Data Analysis
Control Flow

Command-line Series Introductory Linux for Bioinformatics

25 Lessons
8.8 hours
Intermediate
What you'll learn
Getting Familiar With Linux
Piping and Control Data Flow
Pre-processing Biological Datasets
Processing and Analysis of Biological Datasets

Advanced BioPython for Bioinformatics

48 Lessons
3.8 hours
All Levels
What you'll learn
Introduction
Sequence Analysis
Sequence Data Parsing
Sequence Data Extraction
Alignment Parsing and Analysis
BLAST Database Searching
Parsing BLAST results
Biological Data Retrieval
Parsing a PDB Structure file
Phylogenetic Analysis
Protein Sequence Analysis

Command-line Series Fundamentals of Linux for Bioinformatics

18 Lessons
3.3 hours
Beginner
What you'll learn
Getting Familiar With Linux
Pre-processing Biological Datasets